I mostly do. 99.9% of the software I use is a Debian package. Well on Debian anyway. I do have one AppImage.
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Arch based distros (except for Manjaro) has every FOSS and some proprietary software on the AUR
Let me try to clarify what you are saying.
You are saying that the AUR “has every FOSS and some proprietary software”. Yep. That is why I add an Arch Distrobox to every system regardless of the host distro.
But what do you mean by “except Manjaro”? Most Manjaro fans will say that Manjaro also supports the AUR. They are correct that you can certainly enable it and start installing packages from there.
I assume you are warning that, because Manjaro maintains its own base repos and has different package versions in it than Arch does, that Manjaro is incompatible with the AUR and that using the AUR with Manjaro will cause problems. If that is what you are saying, I agree with you.
I never use flatpaks and am doing just fine. I don't want my packages to be installed from a bunch of different places; I want it all managed by one package manager, which for me is my distro package manager. I've never noticed a problem arising out of not using flatpaks; everything I want is either already packaged for me, or I can make a package myself.
That's what I do. But then I mostly use Arch or Arch based distros (e.g. EndeavourOS). So I have access to AUR. If something isn't on AUR (very rare, but can happen), I just create the package for it and publish to AUR. I do use some AlmaLinux machines as server. I don't really need many programs outside of the standard repos there since I use them mostly for hosting Docker images. But if I do need to install something like that, I've some self-written LURE install scripts.
It really only makes sense to me when your distro is older or doesn't have the software you want. I fully prefer native packages too, though, but I use Flatpak on phone.
Flatpak is supposed to "just work" everywhere.
Just use Nix. It can run all the packages on whatever platform. It has the largest repository of software & are some of the most up-to-date.