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The cult of Obsidian: Why people are obsessed with the note-taking app
(www.fastcompany.com)
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Joplin stores its files inside a database. Obsidian stores all notes as individual plaintext Markdown files.
In the first instance, that's clearly more future-proof and robust - your notes are immediately available in any application without a layer of abstraction. You can't have a single file corrupt and destroy all your notes.
I vastly prefer it for that reason. I want to know these notes are still going to work fine in 10 years, and be easily accessible.