What I don't get about this is that a gallon of distilled water is like .99 cents at your local grocery store in the US. This is not a huge problem to acquire safe water to do this.
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Snorfing amoebae up one's nose turns out to have consequences.
This was also literally the plot of an episode of House.
Dunno why the downvote, the episode in question was 8.17, titled "We Need The Eggs". The patient developed a brain-eating amoeba infection by using tap water in a neti pot.
Stop cleaning your sinuses in general, your body creates that mucus for a reason.