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I am on CalyxOS and the 2FA for my work, works flawlessly even after I block the trackers that come with its Android app.
Unfortunately it's just this specific app that (they say) doesn't work on non-mainstream android os's. It specifically generated 8 character codes and you use a URL instead of a string of characters to register it. According to the comments it doesn't work on jailbroken devices either since it scans your other apps and won't work if it finds something it didn't like. If it was just a general 2fa app then I'd just switch to a different one and have switched to grapheneos
No issues with running the RSA Authenticator (SecurID) app on both the Pixel 6 and 8 on the latest Android 14 build of GrapheneOS.
See previous reply for details as to why it wasn't working for non-GrapheneOS users as well - over a year ago is when it started being problematic.