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Manjaro GNOME immediately logs out after logging in (via GUI)
(lemmy.dbzer0.com)
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Community icon by Alpár-Etele Méder, licensed under CC BY 3.0
That's why you change the repos, tho, instead of mixing those from arch and manjaro, and do overwrites to avoid trouble with their configs. Also, I have a feeling pacman tells you when a package managed by it is no longer in the repos, so you just remove it to not accidentally take part in another round of ddos-ing aur or whatever manjaro's packages currently do for fun.
As for why, that's just to avoid setting up everything from scratch