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Thank you for these ideas, I will read up on systat+sar and give it a go.
Also smart to have the script always running, sleeping, rather than launching it at intervals.
I know all of this is a poor hack, and I must address the cause - but so far I have no clues what's causing it. I'm running a bunch of Docker containers so it is very likely one of them painting itself into a corner, but after a reboot there's nothing to see, so I am now starting with logging the top process. Your ideas might work better.